Pathophysiology of Haemostasis and Thrombosis
Stochastic Modeling of Blood Coagulation InitiationLo K. · Denney W.S. · Diamond S.L.Institute for Medicine and Engineering, Department of Chemical and Biomolecular Engineering, University of Pennsylvania, 1024 Vagelos Research Laboratories, Philadelphia, Pa., USA
Scott L. Diamond Institute for Medicine and Engineering Department of Chemical and Biomolecular Engineering, University of Pennsylvania 1024 Vagelos Research Laboratories, Philadelphia, PA 19104 (USA) Tel. +1 215 573 5702, Fax +1 215 573 7227, E-Mail sld@seas.upenn.edu |
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Abstract
A kinetic Monte Carlo simulation was developed using the deterministic reaction network developed by the Mann laboratory for tissue-factor (TF)-initiated blood coagulation. The model predicted thrombin dynamics in recalcified whole blood (3-fold diluted) pretreated with convulxin (platelet GPVI activator) and picomolar levels of TF (0–14 pM). The model did not accurately predict coagulation times at low TF (0–0.7 pM). The simulation revealed that ∼0.2 pM TF was the critical concentration to cause 50% of reactions containing 3-fold diluted whole blood to reach a clotting threshold of 0.05 U/ml thrombin by 1 h. Simulations of 1 nl of blood (5 pM TF) revealed small stochastic variations in thrombin initiation time, while 16.6 pl simulations were highly stochastic at this level of TF (50 molecules/16.6 pl). Further experiment and simulation will require evaluation of mechanisms of coagulation kinetics at subpicomolar levels of TF.
© 2005 S. Karger AG, Basel
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References
- Kuharsky AL, Fogelson AL: Surface-mediated control of blood coagulation: the role of binding site densities and platelet deposition. Biophys J 2001;80:1050–1074.
- Doggett TA, Girdhar G, Lawshe A: Alterations in the intrinsic properties of the GPIbalpha-VWF tether bond define the kinetics of the platelet-type von Willebrand disease mutation, Gly233Val. Blood 2003;102:152–160.
- Laurenzi IJ, Diamond SL: Monte Carlo simulation of the heterotypic aggregation kinetics of platelets and neutrophils. Biophys J 1999;77:1733–1746.
- Hockin MF, Jones KC, Everse SJ, Mann KG: A model for the stoichiometric regulation of blood coagulation. J Biol Chem 2002;277:18322–18333.
- Bungay SD, Gentry PA, Gentry RD: A mathematical model of lipid-mediated thrombin generation. Math Med Biol 2003;20:105–129.
-
Radhakrishnan K, Hindmarsh AC: Description and Use of LSODE, the Livermore Solver for Ordinary Differential Equations. LLNL report UCRL-ID-113855, Dec 1993.
-
Gillespie DT: Exact stochastic simulation of coupled chemical reactions. J Phys Chem1977;81:2340–2361.
External Resources
- Lo K, Diamond SL: Blood coagulation kinetics: high throughput method for real-time reaction monitoring. Thromb Haemost 2004;92:874–882.
- Eerkes A, Shou WZ, Naidong W: Liquid/liquid extraction using 96-well plate format in conjunction with hydrophilic interaction liquid chromatography – tandem mass spectrometry method for the analysis of fluconazole in human plasma. J Pharm Biomed Anal 2003;31:917–928.
- Xie F, Bruntlett CS, Zhu Y, Kissinger CB, Kissinger PT: Good preclinical bioanalytical chemistry requires proper sampling from laboratory animals: automation of blood and microdialysis sampling improves the productivity of LC/MSMS. Anal Sci 2003;19:479–485.
- Sugimoto M, Matsui H, Mizuno T, Tsuji S, Miyata S, Matsumoto M, Matsuda M, Fujimura Y, Yoshioka A: Mural thrombus generation in type 2A and 2B von Willebrand disease under flow conditions. Blood 2003;101:915–920.
- Klein B, Faridi A, von Tempelhoff GF, Heilmann L, Mittermayer C, Rath W: A whole blood flow cytometric determination of platelet activation by unfractionated and low molecular weight heparin in vitro. Thromb Res 2003;108:291–296.
- Gosalia DN, Diamond SL: Printing chemical libraries on microarrays for fluid phase nanoliter reactions. Proc Natl Acad Sci USA. 2003;100:8721–8726.
-
Gosalia DN, Salisbury CM, Ellman JA, Diamond SL: High throughput substrate specificity profiling of serine and cysteine proteases using solution-phase fluorogenic peptide microarrays. Mol Cell Proteomics 2005. Feb 10; [Epub ahead of print].
-
Gosalia DN, Salisbury CM, Maly DJ, Ellman JA, Diamond SL: Profiling serine protease substrate specificity with solution phase fluorogenic peptide microarrays. Proteomics 2005; in press.
- Gailani D, Broze GJ: Factor XI activation in a revised model of blood coagulation. Science 1991;253:909–912.
- Brummel-Ziedins KE, Pouliot RL, Mann KG: Thrombin generation: phenotypic quantitation. J Thromb Haemost 2004;2:281–288.
- Butenas S, Brummel KE, Branda RF, Paradis SG, Mann KG: Mechanism of factor VIIa-dependent coagulation in hemophilia blood. Blood 2002;99:923–930.
- Hemker HC, Giesen P, Al Dieri R, Regnault V, de Smedt E, Wagenvoord R, Lecompte T, Beguin S: Calibrated automated thrombin generation measurement in clotting plasma. Pathophysiol Haemost Thromb 2003;33:4–15.
- Hemker HC, Giesen PL, Ramjee M, Wagenvoord R, Beguin S: The thrombogram: monitoring thrombin generation in platelet-rich plasma. Thromb Haemost 2000;83:589–591.
- Hemker HC, Giesen P, Al Dieri R, Regnault V, de Smed E, Wagenvoord R, Lecompte T, Beguin S: The calibrated automated thrombogram (CAT): a universal routine test for hyper- and hypocoagulability. Pathophysiol Haemost Thromb 2002;32:249–253.
-
Matsumoto M, Nishimura T: Mersenne Twister: a 623-dimensionally equidistributed uniform pseudorandom number generator. ACM Transactions on Modeling and Computer Simulation 1998;7:3–30.
External Resources
- Holmes MB, Schneider DJ, Hayes MG, Sobel BE, Mann KG: Novel, bedside, tissue factor-dependent clotting assay permits improved assessment of combination antithrombotic and antiplatelet therapy. Circulation 2000;102:2051–2057.
- Kramer RM, Hession C, Johansen B, Hayes G, McGray P, Chow EP, Tizard R, Pepinsky RB: Structure and properties of a human non-pancreatic phospholipase A2. J Biol Chem 1989;264:5768–5775.
- Johnston GI, Pickett EB, McEver RP, George JN: Heterogeneity of platelet secretion in response to thrombin demonstrated by fluorescence flow cytometry. Blood 1987;69:1401–1403.
- Polgár J, Clemetson JM, Kehrel BE, Wiedemann M, Magnenat EM, Wells TN, Clemetson KJ: Platelet activation and signal transduction by convulxin, a C-type lectin from Crotalus durissus terrificus (tropical rattlesnake) venom via the p62/GPVI collagen receptor. J Biol Chem 1997;272:13576–13583.
- Rauch U, Nemerson Y: Circulating tissue factor and thrombosis. Curr Opin Hematol 2000;7:273–277.
- Goel MS, Diamond SL: Factor VIIa-mediated tenase function on activated platelets under flow. J Thromb Haemost 2004;8:1402–1410.
- Coughlin SR: Thrombin signaling and protease-activated receptors. Nature 2000;407:258–264.
Article / Publication Details
Published online: January 26, 2006
Issue release date: January 2006
Number of Print Pages: 11
Number of Figures: 5
Number of Tables: 3
ISSN: 1424-8832 (Print)
eISSN: 1424-8840 (Online)
For additional information: https://www.karger.com/PHT
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